View a Predicted Protein Structure

Utilizing AlphaFold2 (v.2.3.2) on NIH's Biowulf supercomputing resource, proteome-scale protein structure predictions were generated for H. symbiolongicarpus (21,930 proteins) and H. echinata (28,729 proteins).

Each protein structure can be visualized using our implementation of the Mol* Viewer. The viewer allows users to zoom in and out, rotate, stylize, and download protein models. Each protein structure model is color-coded based on its per-residue model confidence score (pLDDT).

Search for a predicted protein structure using a Hydractinia protein identifier (e.g., HyS0001.100; HyE0002.101):

Full sets of Hydractinia PDB files, including per-residue pLDDT scores for each protein structure prediction, can be downloaded by clicking on the Download Protein Structures link in the sidebar. The per-residue pLDDT scores can be found in the second-to-last column in each PDB file.